SNP Profiles matching MARPER 16

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	CC	GG	CC	AA	GG	CC	AA	GG	AA	CC	TT	GG
1._RUQ_1334	_	_	CC	GG	CC	AA	AG	CC	AA	_	AA	CC	TT	GG
2._MARPER_28	-	TT	-	GG	-	-	AA	CC	-	GG	AA	CC	TT	-
3._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
4._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
5._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
6._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
7._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
8._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
9._RUQ_877	_	_	CC	GG	CC	AA	AA	CC	AA	_	AA	CC	-	GG
10._POUND_2_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
11._POUND_25_/A	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
12._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
13._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
14._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
15._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
16._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
17._GC-01-093-5-10	GG	TT	CC	GG	CC	AA	AA	CC	AA	GG	AA	CC	TT	GG
18._MARPER_38	-	TT	-	GG	-	-	AA	CC	-	GG	AA	CC	CT	-

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	AA	GG	TT	CC	CC	CC	CC	GG	AA	TT	GG
1._RUQ_1334	GG	AA	CC	_	GG	_	CG	CC	CC	_	_	_	_	GG
2._MARPER_28	GG	-	CC	AA	GG	TT	-	-	CC	-	GG	AA	TT	GG
3._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
4._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
5._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
6._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
7._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
8._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
9._RUQ_877	GG	AA	CC	_	GG	_	CG	CC	CC	_	_	_	_	GG
10._POUND_2_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
11._POUND_25_/A	GG	AA	CC	AA	GG	_	GG	_	CC	CC	GG	AA	TT	GG
12._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
13._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
14._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
15._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
16._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
17._GC-01-093-5-10	GG	AA	CC	AA	GG	GG	GG	CC	CC	CC	GG	AA	TT	GG
18._MARPER_38	GG	-	CC	AA	GG	TT	-	-	CC	-	GG	AA	TT	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	CC	AA	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
1._RUQ_1334	CC	_	_	_	TT	_	_	_	TT	CC	_	X_X	X_X	X_X
2._MARPER_28	-	AG	-	CC	-	TT	AA	-	TT	CC	CC	X_X	X_X	X_X
3._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
4._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
5._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
6._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
7._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
8._POUND_2_/A	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
9._RUQ_877	CC	_	_	_	TT	_	_	_	TT	CC	_	X_X	X_X	X_X
10._POUND_2_/A	CC	AG	_	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
11._POUND_25_/A	CC	AG	_	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
12._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
13._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
14._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
15._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
16._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
17._GC-01-093-5-10	CC	AG	CC	CC	TT	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
18._MARPER_38	-	AG	-	CC	-	TT	AA	-	TT	CG	CC	X_X	X_X	X_X

Input profile: MARPER_16

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 750A

Dapeng Zhang, 2014

1._NA_916 RUQ_1334

95.7 %
23 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._MARPER_28

94 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 647A

Dapeng Zhang, 2014

3._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 2

Dapeng Zhang, 2016

5._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 11

Dapeng Zhang, 2016

6._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 4 > FP

Dapeng Zhang, 2016

7._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 7 > FP

Dapeng Zhang, 2016

8._POUND_2_/A

93.2 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1510 9 > FP

Dapeng Zhang, 2016

9._CRU_100 RUQ_877

93.2 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._POUND_2_/A

93.1 %
36 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A75 T3

Dapeng Zhang, 2016

11._POUND_25_/A

93.1 %
36 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F406 T5

Dapeng Zhang, 2016

12._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

15._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

16._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

17._POUND_2_/A GC-01-093-5-10

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

18._MARPER_38

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 167

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1520